PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_012893-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 463aa    MW: 50514.2 Da    PI: 8.7812
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_012893-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.5e-13391436655
                    HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +++Er RR ri +++ +L+el+P+     +k  + a++L +AveYIk+Lq
  NNU_012893-RA 391 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVEYIKDLQ 436
                    689*********************7....688*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.148385435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-16388445IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.22E-12389440No hitNo description
Gene3DG3DSA:4.10.280.103.3E-15390446IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-13391441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-9391436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MMFGGSEALT KDMNLLFPSP FKNSEELQSK SREVMNSDLH LHHHHQQHAR QSQQQQLGSG  60
LMRLRSAPSS LLANFIDGSS GNVEDGCEDF LHPRSSSPEA ESMFARFMSS GGSGSGGDSS  120
LPDPREIGEK PSALSPSTGA INHRNSQLAP TEREGKVVPQ HNGYSSLSHM MYQSQTQPPL  180
PSHSSATTTT DVDSSYRVMN SMTMDHPTQV KTAGGNLIRH SSSPAGLFSH LTAENGMRST  240
ERMVAENYLR SCYAVMRGMG NFHAGNGTNG EAASTTSRLK RQISFSSGNP DDGSFGSGNA  300
GNRGYIQGFP VGSWEDSALV SENVTGLKRI RDTNGGNQNG EAGSRPPMLA HHFSLPKTSV  360
EMAAMEKFLQ FQDAVPCKIR AKRGCATHPR SIAERVRRTR ISERMRKLQE LVPNMDKQTN  420
TADMLDLAVE YIKDLQKQVK TLNDNRANCT CSSKQKSYSN PTV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010265791.10.0PREDICTED: transcription factor bHLH130-like isoform X3
TrEMBLA5B8901e-129A5B890_VITVI; Putative uncharacterized protein
STRINGVIT_06s0004g01740.t011e-117(Vitis vinifera)
STRINGVIT_08s0007g07810.t011e-116(Vitis vinifera)
STRINGPOPTR_0009s06910.11e-116(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.17e-77bHLH family protein